{"id":384,"date":"2022-02-04T16:24:21","date_gmt":"2022-02-04T15:24:21","guid":{"rendered":"https:\/\/pgtb.fr\/?page_id=384"},"modified":"2026-01-08T15:12:54","modified_gmt":"2026-01-08T14:12:54","slug":"publications","status":"publish","type":"page","link":"https:\/\/pgtb.fr\/en\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">La PGTB est associ\u00e9e chaque ann\u00e9e dans de nombreuses publications, en co-autorat ou en remerciement.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">La PGTB doit \u00eatre <em>a minima<\/em> mentionn\u00e9e dans les remerciements des publications issues des projets r\u00e9alis\u00e9s \u00e0 la plateforme. La phrase suivante est propos\u00e9e :<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>\u00ab\u00a0Part of the experiments (<span style=\"text-decoration:underline\">specify which ones<\/span>) were performed at the PGTB (<\/strong><a href=\"https:\/\/doi.org\/10.15454\/1.5572396583599417E12\">https:\/\/doi.org\/10.15454\/1.5572396583599417E12<\/a><strong>)<\/strong> <strong>with the help of (s<span style=\"text-decoration:underline\">pecify with whom<\/span>)\u00a0\u00bb.<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">L&rsquo;affiliation suivante doit \u00eatre syst\u00e9matiquement utilis\u00e9e :<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Univ. Bordeaux, INRAE, BIOGECO, F-33610 Cestas, France<\/strong><\/p>\n\n\n\n<p class=\"has-primary-color has-text-color wp-block-paragraph\" style=\"font-size:29px\"><\/p>\n\n\n\n<p class=\"has-primary-color has-text-color wp-block-paragraph\" style=\"font-size:29px\"><strong>2025<\/strong><\/p>\n\n\n\n<p class=\"has-text-align-justify wp-block-paragraph\">Barloy-Hubler, F., Le Gac, A.-L., <strong>Boury, C., Guichoux, E.<\/strong> &amp; Barloy, D. 2025. Sequencing, de novo assembly of Ludwigia plastomes, and comparative analysis within the Onagraceae family, Peer Community Journal, 5: e43 <a href=\"https:\/\/doi.org\/10.24072\/pcjournal.536\">https:\/\/doi.org\/10.24072\/pcjournal.536<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Giordano, B., Daric, V., Bramanti, L., <strong>Delcamp, A., Guichoux, E.<\/strong>, Cannas, R., Guizien, K., 2025. Identification of a set of SNPs markers for parentage analysis of the mediterranean red coral (Corallium rubrum). Conservation Genet Resour 17, 151\u2013154. <a href=\"https:\/\/doi.org\/10.1007\/s12686-025-01395-5\">https:\/\/doi.org\/10.1007\/s12686-025-01395-5<\/a><\/p>\n\n\n\n<p class=\"has-text-align-justify wp-block-paragraph\">Goncalves, A. L., Garc\u00eda, M. V., <strong>Chancerel, E., Lepais, O<\/strong>., &amp; Heuertz, M. 2025. High-throughput sequence-based microsatellite genotyping for the non-model Neotropical tree species Anadenanthera colubrina (Leguminosae).\u00a0<em>Plant Ecology and Evolution<\/em>,\u00a0<em>158<\/em>(1), 43., 2025<br><a href=\"https:\/\/doi.org\/10.5091\/plecevo.138834\">https:\/\/doi.org\/10.5091\/plecevo.138834<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Lepais, O.,<\/strong> Paz\u2010Vinas, I., 2025. Counting the Invisible: New Tools to Estimate the Number of Contributors From Sequence\u2010Based Microsatellite Genotyping of Environmental DNA Samples. Mol Ecol Resour 25, e70051. <a href=\"https:\/\/doi.org\/10.1111\/1755-0998.70051\">https:\/\/doi.org\/10.1111\/1755-0998.70051<\/a><\/p>\n\n\n\n<p class=\"has-text-align-justify wp-block-paragraph\">Soliani, C., Sekely, J., Zamora\u2010ballesteros, C., Heer, K., <strong>Lepais, O.<\/strong>, Mondino, V., Opgenoorth, L., Pastorino, M., Marchelli, P., 2025. Restricted Dispersal in the Late Successional Forest Tree Species Nothofagus Pumilio: Consequences Under Global Change. Ecology and Evolution 15. <a href=\"https:\/\/doi.org\/10.1002\/ece3.71002\">https:\/\/doi.org\/10.1002\/ece3.71002<\/a><\/p>\n\n\n\n<p class=\"has-primary-color has-text-color wp-block-paragraph\" style=\"font-size:29px\"><strong>2024<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Allegue H., Guinet C., Patrick S.C., Ribout C., Bichet C., <strong>Lepais O<\/strong>., R\u00e9ale D., 2024. Offspring sex ratio increases with paternal reproductive success in a colony of southern elephant seals. Marine Mammal Science. <a href=\"https:\/\/doi.org\/10.1111\/mms.13108\">https:\/\/doi.org\/10.1111\/mms.13108<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Belair M, Picot A, <strong>Lepais O<\/strong>, Masson C, H\u00e9brard MN, Moronvalle A, Comont G, Gabri Martin VM, Tr\u00e9guer S, Laloum Y, Corio-Costet MF, Michailides TJ, Moral J, Le Floch G, Pensec F., 2024. Genetic diversity and population structure of Botryosphaeria dothidea and Neofusicoccum parvum on English walnut (Juglans regia L.) in France. Sci Rep. DOI:&nbsp;<a href=\"https:\/\/doi.org\/10.1038\/s41598-024-67613-6\" target=\"_blank\" rel=\"noreferrer noopener\">10.1038\/s41598-024-67613-6<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Davies, P., J. R. Britton, D. Andreou, C. Crundwell, J. R. Dodd, <strong>O. Lepais<\/strong>, A. D. Nunn, S. Sabatino, R. Velterop &amp; J. D. Bolland, 2024. Tracking repeat spawning anadromous fish migrations over multiple years in a fragmented river suggests philopatry and sex-linked variation in space use. Aquatic Sciences 86: 34. <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s00027-024-01048-z\">https:\/\/doi.org\/10.1007\/s00027-024-01048-z<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Kremer, A., <strong>Delcamp, A<\/strong>., Lesur, I., Wagner, S., Rellstab, C., <strong>Guichoux, E<\/strong>., and Leroy, T<em>.<\/em>, 2024. Whole-genome screening for near-diagnostic genetic markers for four western European white oak species identification.&nbsp;Annals of Forest Science. <a href=\"https:\/\/doi.org\/10.1186\/s13595-024-01236-9\">https:\/\/doi.org\/10.1186\/s13595-024-01236-9<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Lesur I, Rogier O, Sow MD, <strong>Boury C<\/strong>, Duplan A, Garnier A, Senhaji-Rachik A, Civan P, Daron J, Delaunay A, Duvaux L, Benoit V, <strong>Guichoux E<\/strong>, Le Provost G, Sanou E, Ambroise C, Plomion C, Salse J, Segura V, Tost J, Maury S., 2024. A strategy for studying epigenetic diversity in natural populations: proof of concept in poplar and oak. J Exp Bot. DOI:&nbsp;<a href=\"https:\/\/doi.org\/10.1093\/jxb\/erae266\" target=\"_blank\" rel=\"noreferrer noopener\">10.1093\/jxb\/erae266<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Lopes, M., Vincent, A., Thomas, F., Clouard, C., Comte, R., Brien, M., Chambeaud, J., H\u00e9rault, F., <strong>Guichoux, E., Boury, C<\/strong>., Resmond, R., &amp; Merlot, E., 2024. Data paper: Dataset describing the effects of environmental enrichment and sows\u2019 characteristics on the peripheral blood mononuclear cell transcriptome.&nbsp;<em>Animal &#8211; Open Space<\/em>.<a href=\"https:\/\/doi.org\/10.1016\/j.anopes.2024.100078\">https:\/\/doi.org\/10.1016\/j.anopes.2024.100078<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Capo, L.F., Degen, B., Blanc-Jolivet, C., Tysklind, N., Cavers, S., Mader, M., Meyer-Sand, B.R., Paredes-Villanueva, K., Honorio Conorado, E.N., Garcia-Davila, C.R., Troispoux, V., <strong>Delcamp, A<\/strong>., &amp; Sebbenn, A.M., 2024. Timber Tracking of Jacaranda copaia from the Amazon Forest Using DNA Fingerprinting.&nbsp;<em>Forests<\/em>.<a href=\"https:\/\/doi.org\/10.3390\/f15081478\"> https:\/\/doi.org\/10.3390\/f15081478<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Schmitt S, Heuret P, Troispoux V, Beraud M, Cazal J, <strong>Chancerel E<\/strong>, Cravero C, <strong>Guichoux E, Lepais O<\/strong>, Loureiro J, Marande W, Martin-Ducup O, Vincent G, Chave J, Plomion C, Leroy T, Heuertz M, Tysklind N., 2024. Low-frequency somatic mutations are heritable in tropical trees&nbsp;<em>Dicorynia guianensis<\/em>&nbsp;and&nbsp;<em>Sextonia rubra<\/em>. Proc Natl Acad Sci U S A. DOI:&nbsp;<a href=\"https:\/\/doi.org\/10.1073\/pnas.2313312121\" target=\"_blank\" rel=\"noreferrer noopener\">10.1073\/pnas.2313312121<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Saloj\u00e4rvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, Mu\u00f1oz DS, Meidanis J, Paschoal AR, Bawin Y, Krabbenhoft TJ, Wang ZQ, Fleck SJ, Aussel R, Bellanger L, Charpagne A, Fournier C, Kassam M, Lefebvre G, M\u00e9tairon S, Moine D, Rigoreau M, Stolte J, Hamon P, Couturon E, Tranchant-Dubreuil C, Mukherjee M, Lan T, Engelhardt J, Stadler P, Correia De Lemos SM, Suzuki SI, Sumirat U, Wai CM, Dauchot N, Orozco-Arias S, Garavito A, Kiwuka C, Musoli P, Nalukenge A, <strong>Guichoux E<\/strong>, Reinout H, Smit M, Carretero-Paulet L, Filho OG, Braghini MT, Padilha L, Sera GH, Ruttink T, Henry R, Marraccini P, Van de Peer Y, Andrade A, Domingues D, Giuliano G, Mueller L, Pereira LF, Plaisance S, Poncet V, Rombauts S, Sankoff D, Albert VA, Crouzillat D, de Kochko A, Descombes P., 2024. The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nat Genet. &nbsp;DOI:&nbsp;<a href=\"https:\/\/doi.org\/10.1038\/s41588-024-01695-w\" target=\"_blank\" rel=\"noreferrer noopener\">10.1038\/s41588-024-01695-w<\/a><\/p>\n\n\n\n<p class=\"has-primary-color has-text-color wp-block-paragraph\" style=\"font-size:29px\"><strong>2023<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Baby, V., Ambroset, C., Gaurivaud, P., Falquet, L., <strong>Boury, C., Guichoux<\/strong>, E., Jores, J., Lartigue, C., Tardy, F., Sirand-Pugnet, P., 2023. Comparative genomics of Mycoplasma feriruminatoris, a fast-growing pathogen of wild Caprinae. Microb Genom 9, 001112. <a href=\"https:\/\/doi.org\/10.1099\/mgen.0.001112\">https:\/\/doi.org\/10.1099\/mgen.0.001112<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Barroso-Bergad\u00e0, D., Delmotte, F., Faivre d\u2019Arcier, J., <strong>Massot, M., Chancerel, E.<\/strong>, Demeaux, I., Guimier, S., <strong>Guichoux, E<\/strong>., Bohan, D.A., Vacher, C., 2023a. Leaf Microbiome Data for European Cultivated Grapevine ( Vitis vinifera ) During Downy Mildew ( Plasmopara viticola ) Epidemics in Three Wine-Producing Regions in France. PhytoFrontiers\u2122 3, 477\u2013483. <a href=\"https:\/\/doi.org\/10.1094\/PHYTOFR-11-22-0138-A\">https:\/\/doi.org\/10.1094\/PHYTOFR-11-22-0138-A<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Barroso-Bergad\u00e0, D., Massot, M., Vignolles, N., Faivre d\u2019Arcier, J., <strong>Chancerel, E., Guichoux, E.<\/strong>, Walker, A.-S., Vacher, C., Bohan, D.A., Laval, V., Suffert, F., 2023b. Metagenomic Next-Generation Sequencing (mNGS) Data Reveal the Phyllosphere Microbiome of Wheat Plants Infected by the Fungal Pathogen Zymoseptoria tritici. Phytobiomes Journal 7, 281\u2013287. <a href=\"https:\/\/doi.org\/10.1094\/PBIOMES-02-22-0008-FI\">https:\/\/doi.org\/10.1094\/PBIOMES-02-22-0008-FI<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Cambon, M.C., Cartry, D., <strong>Chancerel, E<\/strong>., Ziegler, C., Levionnois, S., Coste, S., Stahl, C., Delzon, S., Bu\u00e9e, M., Burban, B., Cazal, J., Fort, T., Goret, J.-Y., Heuret, P., L\u00e9ger, P., Louisanna, E., Ritter, Y., Bonal, D., Roy, M., Schimann, H., Vacher, C., 2023a. Drought Tolerance Traits in Neotropical Trees Correlate with the Composition of Phyllosphere Fungal Communities. Phytobiomes Journal 7, 244\u2013258. <a href=\"https:\/\/doi.org\/10.1094\/PBIOMES-04-22-0023-R\">https:\/\/doi.org\/10.1094\/PBIOMES-04-22-0023-R<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Cambon, M.C., Trillat, M., Lesur\u2010Kupin, I., Burlett, R., <strong>Chancerel, E., Guichoux, <\/strong>E., Piouceau, L., Castagneyrol, B., Le&nbsp;Provost, G., Robin, S., Ritter, Y., Van&nbsp;Halder, I., Delzon, S., Bohan, D.A., Vacher, C., 2023b. Microbial biomarkers of tree water status for next\u2010generation biomonitoring of forest ecosystems. Molecular Ecology 32, 5944\u20135958. <a href=\"https:\/\/doi.org\/10.1111\/mec.17149\">https:\/\/doi.org\/10.1111\/mec.17149<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Chancerel, E.,<\/strong> Acolas, M.-L., <strong>Lepais, O<\/strong>., 2023. Species-level identification of the critically endangered European sturgeon Acipencer sturio using DNA-based approaches (preprint). Ecology. <a href=\"https:\/\/doi.org\/10.1101\/2023.05.05.539572\">https:\/\/doi.org\/10.1101\/2023.05.05.539572<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Clochard, G-J., Mbengue, A., Mettling, C., Diouf, B., Faurie, C., Sene, O., <strong>Chancerel, E., Guichoux, E.<\/strong>, Hollard, G., Raymond, M., Willinger, M., 2023. The efect of the 7R allele at the DRD4 locus on risk tolerance is independent of background risk in Senegalese fishermen. Sci Rep 13, 622. <a href=\"https:\/\/doi.org\/10.1038\/s41598-022-27002-3\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1038\/s41598-022-27002-3<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Fort, T., Pauvert, C., <strong>Chancerel, E<\/strong>., Burlett, R., Wingate, L., Vacher, C., 2023. Leaf microbiome data for European beech (Fagus sylvatica) at the leaf and canopy scales collected in a gallery forest in South-West France. Annals of Forest Science 80, 14. <a href=\"https:\/\/doi.org\/10.1186\/s13595-023-01181-z\">https:\/\/doi.org\/10.1186\/s13595-023-01181-z<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Padr\u00f3n, M., Milhes, M., <strong>Delcamp, A., Guichoux, E.,<\/strong> Guizien, K., 2023. Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa). Conservation Genet Resour 15, 145\u2013147. <a href=\"https:\/\/doi.org\/10.1007\/s12686-023-01313-7\">https:\/\/doi.org\/10.1007\/s12686-023-01313-7<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Tamarelle, J., <strong>Penaud, B., Tyssandier, B., Guichoux, E.<\/strong>, de Barbeyrac, B., Peuchant, O., Baita, D., Ouziel-Duretz, C., Poudens, B., Brun, R., Jouvert, S., Tesson, A., Carri\u00e8re, J., Diaz, M., Forget, C., Le Hen, I., Ahano-Ducourneau, F., Van, D.H., Robert, P., Brun, F., Lhospital, E., Bardou, J., Guegan, A., Moura, S.R., Leriche, C., De Cussy, A., Malfait, M., Rychen, C., Martinet, P., Kugeler, A., Barriere, L., Gutierrez, L., Robert, J.-L., Saule, J., Bergamaschi, V., Soltana, S.B., Aymar-Moulene, D., Bernier, C., Lecompte, A.-S., Gregoire, A., Girard, T., Naccache, M.-A., Lefebvre, P., Crombe, P., Bulot, C., Rolland, A.-L., Dernivoix, K., Trouillet, C., Trignol-Viguier, N., Blin-Zbiegiel, E., Boissinot, M., Joly, B., Dubreuil, A., Mathieu, C., Pragout, D., B\u00e9b\u00e9ar, C., Grob, A., Zaffreya, S., Le Naour, E., Gibaud, A.S., Lanotte, P., Vach\u00e9e, A., Loubinoux, J., Touati, A., Balcon, C., Roussillon, C., Ghezzoul, B., Perry, F., Turuban, C., Rapin, S., Pastor, C., Cavellec, M., Manvri, E.P., Albane, S., Dernivoix, K., Trouillet, C., Ghiringhelli, E., Pantin, K., Kret, M., Lhomme, E., Garreau, D., Galet, J., 2023. Effects of azithromycin and doxycycline on the vaginal microbiota of women with urogenital Chlamydia trachomatis infection: a substudy of the Chlazidoxy randomized controlled trial. Clinical Microbiology and Infection 29, 1056\u20131062. <a href=\"https:\/\/doi.org\/10.1016\/j.cmi.2023.04.020\">https:\/\/doi.org\/10.1016\/j.cmi.2023.04.020<\/a><\/p>\n\n\n\n<p class=\"has-primary-color has-text-color wp-block-paragraph\" style=\"font-size:29px\"><strong>2022<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Barroso-Bergada, D., <strong>Massot, M<\/strong>., Vignolles, N., d\u2019Arcier, J.F., <strong>Chancerel, E., Guichoux, E.,<\/strong> Walker, A.-S., Vacher, C., Bohan, D.A., Laval, V., Suffert, F., 2022. Metagenomic Next-Generation Sequencing (mNGS) Data Reveal the Phyllosphere Microbiome of Wheat Plants Infected by the Fungal Pathogen <em>Zymoseptoria tritici<\/em>. Phytobiomes  Journal. <a href=\"https:\/\/doi.org\/10.1094\/PBIOMES-02-22-0008-FI\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1094\/PBIOMES-02-22-0008-FI<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Cambon, M.C., Cartry, D., <strong>Chancerel, E<\/strong>., Ziegler, C., Levionnois, S., Coste, S., Stahl, C., Delzon, S., Bu\u00e9e, M., Burban, B., Cazal, J., Fort, T., Goret, J.-Y., Heuret, P., L\u00e9ger, P., Louisanna, E., Ritter, Y., Bonal, D., Roy, M., Schimann, H., Vacher, C., 2022. Drought Tolerance Traits in Neotropical Trees Correlate with the Composition of Phyllosphere Fungal Communities. Phytobiomes Journal.  <a href=\"https:\/\/doi.org\/10.1094\/PBIOMES-04-22-0023-R\">https:\/\/doi.org\/10.1094\/PBIOMES-04-22-0023-R<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Demen\u00e9, A., Laurent, B., Cros-Arteil, S., <strong>Boury, C.<\/strong>, Dutech, C., 2022. Chromosomal rearrangements with stable repertoires of genes and transposable elements in an invasive forest-pathogenic fungus. Heredity. <a href=\"https:\/\/doi.org\/10.1038\/s41437-022-00550-0\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1038\/s41437-022-00550-0<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Marchand, M., Allery, T., <strong>Massot, M<\/strong>., Capdevielle, X., Robin, C., 2022. Resistance, tolerance and competence for a root pathogen in six woody species. Plant Pathology. <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1111\/ppa.13608\" target=\"_blank\">https:\/\/doi.org\/10.1111\/ppa.13608<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Mishra, B., Ulaszewski, B., Meger, J., Aury, J.-M., Bod\u00e9n\u00e8s, C., Lesur-Kupin, I., Pfenninger, M., Da Silva, C., Gupta, D.K., <strong>Guichoux, E.<\/strong>, Heer, K., Lalanne, C., Labadie, K., Opgenoorth, L., Ploch, S., Le Provost, G., Salse, J., Scotti, I., W\u00f6tzel, S., Plomion, C., Burczyk, J., Thines, M., 2022. A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs. Frontiers in Genetics 12. <a href=\"https:\/\/doi.org\/10.3389\/fgene.2021.691058\">https:\/\/doi.org\/10.3389\/fgene.2021.691058<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Penaud, B<\/strong>., Laurent, B., Milhes, M., No\u00fcs, C., Ehrenmann, F., Dutech, C. 2022. SNP4OrphanSpecies: A bioinformatics pipeline to isolate molecular markers for studying genetic diversity of orphan species. Biodiversity Data Journal 10: e85587. <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.3897\/BDJ.10.e85587\" target=\"_blank\">https:\/\/doi.org\/10.3897\/BDJ.10.e85587<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Ponchon, M., Reineke, A., <strong>Massot, M.<\/strong>, Bidochka, M.J., Thi\u00e9ry, D., Papura, D., 2022. Three Methods Assessing the Association of the Endophytic Entomopathogenic Fungus Metarhizium robertsii with Non-Grafted Grapevine Vitis vinifera. Microorganisms 10, 2437. <a href=\"https:\/\/doi.org\/10.3390\/microorganisms10122437\">https:\/\/doi.org\/10.3390\/microorganisms10122437<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Ravign\u00e9, V., Becker, N., Massol, F., <strong>Guichoux, E., Boury, C<\/strong>., Mah\u00e9, F., Facon, B., 2022. Fruit fly phylogeny imprints bacterial gut microbiota. Evolutionary Applications n\/a. <a href=\"https:\/\/doi.org\/10.1111\/eva.13352\">https:\/\/doi.org\/10.1111\/eva.13352<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Silva, F., Enaud, R., Creissen, E., Henao-Tamayo, M., <strong>Delhaes, L.,<\/strong> Izzo, A., 2022. Mouse Subcutaneous BCG Vaccination and Mycobacterium tuberculosis Infection Alter the Lung and Gut Microbiota. Microbiology Spectrum 10, e01693-21. <a href=\"https:\/\/doi.org\/10.1128\/spectrum.01693-21\">https:\/\/doi.org\/10.1128\/spectrum.01693-21<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Vacher, C., Francioni, C., Michel, M., Fort, T., Faivre d\u2019Arcier, J., <strong>Chancerel, E<\/strong>., Delmotte, F., Delmas, C.E.L., 2022. Fungal Metabarcoding Data for Two Grapevine Varieties (Regent and Vitis vinifera \u2018Cabernet-Sauvignon\u2019) Inoculated with Powdery Mildew (Erysiphe necator) Under Drought Conditions. 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Development of new SNPs loci on Quercus robur and Quercus petraea for genetic studies covering the whole species\u2019 distribution range. Conservation Genet Resour 12, 597\u2013600. <a href=\"https:\/\/doi.org\/10\/ghvkfp\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10\/ghvkfp<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Blanc-Jolivet, C., Mader, M., Bouda, H.-N.,<strong> Massot, M<\/strong>., Da\u00efnou, K., Yene, G., Opuni-Frimpong, E., Degen, B., 2020b. Development of new SNP and INDEL loci for the valuable African timber species Lophira alata. Conservation Genet Resour. <a href=\"https:\/\/doi.org\/10\/ghvkfj\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10\/ghvkfj<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Dutech, C., Feau, N., Lesur, I., Ehrenmann, F., Letellier, T., Li, B., Mouden, C., <strong>Guichoux, E<\/strong>., Desprez-Loustau, M.L., Gross, A., 2020. An easy and robust method for isolation and validation of single-nucleotide polymorphic markers from a first Erysiphe alphitoides draft genome. Mycol Progress 19, 615\u2013628. <a href=\"https:\/\/doi.org\/10\/ghxd2c\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10\/ghxd2c<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Honorio Coronado, E.N., Blanc-Jolivet, C., Mader, M., Garc\u00eda-D\u00e1vila, C.R., Aldana Gomero, D., del Castillo Torres, D., Flores Llampazo, G., Hidalgo Pizango, G., Sebbenn, A.M., Meyer-Sand, B.R.V., Paredes-Villanueva, K., Tysklind, N., Troispoux, V., <strong>Massot, M.<\/strong>, Carvalho, C., de Lima, H.C., Cardoso, D., Degen, B., 2020. SNP Markers as a Successful Molecular Tool for Assessing Species Identity and Geographic Origin of Trees in the Economically Important South American Legume Genus Dipteryx. Journal of Heredity 111, 346\u2013356. <a href=\"https:\/\/doi.org\/10\/ghvkfw\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10\/ghvkfw<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Lap\u00e8gue, S., Heurtebise, S., Cornette, F., <strong>Guichoux, E.,<\/strong> Gagnaire, P.-A., 2020. Genetic Characterization of Cupped Oyster Resources in Europe Using Informative Single Nucleotide Polymorphism (SNP) Panels. Genes 11, 451. <a href=\"https:\/\/doi.org\/10\/ghxd3k\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10\/ghxd3k<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Laurent, B., Larue, C., <strong>Chancerel, E.<\/strong>, <strong>Guichoux, E<\/strong>., Petit, R.J., Barreneche, T., Robin, C., <strong>Lepais, O.<\/strong>, 2020a. Microhaplotype genotyping-by-sequencing of 98 highly polymorphic markers in three chestnut tree species. 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PeerJ 8. <a href=\"https:\/\/doi.org\/10\/ghxd3p\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10\/ghxd3p<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Padr\u00f3n, M., Milhes, M., <strong>Massot, M., Guichoux, E.<\/strong>, 2020. Development of a set of SNP markers for population genetics of the red gorgonian (Paramuricea clavata), an emblematic species of the Mediterranean coralligenous. Conservation Genet Resour 12, 521\u2013523. <a href=\"https:\/\/doi.org\/10\/ghxd3q\" rel=\"nofollow\">https:\/\/doi.org\/10\/ghxd3q<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Pakull, B., Schindler, L., Mader, M., Kersten, B., Blanc-Jolivet, C., Paulini, M., Lemes, M.R., Ward, S.E., Navarro, C.M., Cavers, S., Sebbenn, A.M., di Dio, O., <strong>Guichoux, E.<\/strong>, Degen, B., 2020. Development of nuclear SNP markers for Mahogany (Swietenia spp.). Conservation Genet Resour 12, 585\u2013587. <a href=\"https:\/\/doi.org\/10\/ghxd3r\" rel=\"nofollow\">https:\/\/doi.org\/10\/ghxd3r<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Pauvert, C., Fort, T., Calonnec, A., d\u2019Arcier, J.F., <strong>Chancerel, E., Massot, M.,<\/strong> Chiquet, J., Robin, S., Bohan, D.A., Vallance, J., Vacher, C., 2020. Microbial association networks give relevant insights into plant pathobiomes. bioRxiv 2020.02.21.958033. <a href=\"https:\/\/doi.org\/10\/ggp3zm\" rel=\"nofollow\">https:\/\/doi.org\/10\/ggp3zm<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Villellas, J., Mart\u00edn-For\u00e9s, I., Mariette, S., <strong>Massot, M., Guichoux, E<\/strong>., Acu\u00f1a-M\u00edguez, B., Hampe, A., Valladares, F., 2020. Functional distance is driven more strongly by environmental factors than by genetic relatedness in Juniperus thurifera L. expanding forest stands. Annals of Forest Science 77, 66. <a href=\"https:\/\/doi.org\/10\/ghxd26\" rel=\"nofollow\">https:\/\/doi.org\/10\/ghxd26<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n\n\n\n<p class=\"has-primary-color has-text-color wp-block-paragraph\" style=\"font-size:29px\"><strong>2019<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Blanc-Jolivet, C., Mader, M., Bouda, H.-N., <strong>Guichoux, E.<\/strong>, Yene, G., Opuni-Frimpong, E., Degen, B., 2019. Development of SNP markers for the African timber species Nauclea diderrichii. Conservation Genet Resour. <a href=\"https:\/\/doi.org\/10.1007\/s12686-019-01115-w\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/s12686-019-01115-w<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Bouteiller, X.P., Verdu, C.F., Aikio, E., Bloese, P., Dainou, K.,<strong> Delcamp, A<\/strong>., Thier, O.D., <strong>Guichoux, E<\/strong>., Mengal, C., Monty, A., Pucheu, M., Loo, M. van, Port\u00e9, A.J., Lassois, L., Mariette, S., 2019. A few north Appalachian populations are the source of European black locust. Ecology and Evolution 9, 2398\u20132414. <a href=\"https:\/\/doi.org\/10.1002\/ece3.4776\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1002\/ece3.4776<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Enaud, R., Hooks, K.B., Barre, A., Barnetche, T., Hubert, C., <strong>Massot, M.,<\/strong> Bazin, T., Clouzeau, H., Bui, S., Fayon, M., Berger, P., Lehours, P., B\u00e9b\u00e9ar, C., Nikolski, M., Lamireau, T., Delhaes, L., Schaeverbeke, T., 2019. Intestinal Inflammation in Children with Cystic Fibrosis Is Associated with Crohn\u2019s-Like Microbiota Disturbances. Journal of Clinical Medicine 8, 645. <a href=\"https:\/\/doi.org\/10.3390\/jcm8050645\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.3390\/jcm8050645<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Hipp, A.L., Whittemore, A.T., Garner, M., Hahn, M., Fitzek, E., <strong>Guichoux, E.<\/strong>, Cavender-Bares, J., Gugger, P.F., Manos, P.S., Pearse, I.S., Cannon, C.H., 2019. 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Conservation Genet Resour 11, 333\u2013336. <a href=\"https:\/\/doi.org\/10.1007\/s12686-019-01081-3\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/s12686-019-01081-3<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Khattabi, L.A.E., Brun, S., Gueguen, P., Chatron, N., <strong>Guichoux, E<\/strong>., Schutz, S., Nectoux, J., Sorlin, A., Quere, M., Boudjarane, J., Tsatsaris, V., Mandelbrot, L., Schluth\u2010Bolard, C., Dupont, J.M., Rooryck, C., 2019. Performance of semiconductor sequencing platform for non-invasive prenatal genetic screening for fetal aneuploidy: results from a multicenter prospective cohort study in a clinical setting. Ultrasound in Obstetrics &amp; Gynecology 54, 246\u2013254. <a href=\"https:\/\/doi.org\/10.1002\/uog.20112\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1002\/uog.20112<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Pakull, B., Eku\u00e9, M.R.M., Bouka Dipelet, U.G., Doumenge, C., McKey, D.B., Loumeto, J.J., Opuni-Frimpong, E., Yorou, S.N., Nacoulma, B.M.Y., Guelly, K.A., Ramamonjisoa, L., Thomas, D., <strong>Guichoux, E<\/strong>., Loo, J., Degen, B., 2019. Genetic diversity and differentiation among the species of African mahogany (Khaya spp.) based on a large SNP array. Conserv Genet 20, 1035\u20131044. <a href=\"https:\/\/doi.org\/10.1007\/s10592-019-01191-3\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/s10592-019-01191-3<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Roques, S., <strong>Chancerel, E., Boury, C., <\/strong>Pierre, M., Acolas, M.-L., 2019. From microsatellites to single nucleotide polymorphisms for the genetic monitoring of a critically endangered sturgeon. Ecology and Evolution 9, 7017\u20137029. <a href=\"https:\/\/doi.org\/10.1002\/ece3.5268\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1002\/ece3.5268<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Sebbenn, A.M., Blanc-Jolivet, C., Mader, M., Meyer-Sand, B.R.V., Paredes-Villanueva, K., Honorio Coronado, E.N., Garc\u00eda-D\u00e1vila, C., Tysklind, N., Troispoux, V., <strong>Delcamp, A.<\/strong>, Degen, B., 2019. Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia. Conservation Genet Resour 11, 341\u2013343. <a href=\"https:\/\/doi.org\/10.1007\/s12686-019-01097-9\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1007\/s12686-019-01097-9<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Tysklind, N., Blanc-Jolivet, C., Mader, M., Meyer-Sand, B.R.V., Paredes-Villanueva, K., Honorio Coronado, E.N., Garc\u00eda-D\u00e1vila, C.R., Sebbenn, A.M., Caron, H., Troispoux, V., <strong>Guichoux, E<\/strong>., Degen, B., 2019. Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species. 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Oak genome reveals facets of long lifespan. Nature Plants. <a href=\"https:\/\/doi.org\/10.1038\/s41477-018-0172-3\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1038\/s41477-018-0172-3<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Rosa, A.L., Miot-Sertier, C., Laizet, Y., <strong>Salin, F.<\/strong>, Sipiczki, M., Bely, M., Masneuf-Pomarede, I., Albertin, W., 2018. Draft Genome Sequence of the Starmerella bacillaris (syn., Candida zemplinina) Type Strain CBS 9494. Microbiol Resour Announc 7, e00872-18. <a href=\"https:\/\/doi.org\/10.1128\/MRA.00872-18\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/doi.org\/10.1128\/MRA.00872-18<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Staedel, C., Tran, T.P.A., Giraud, J., Darfeuille, F., Di Giorgio, A., Tourasse, N.J.,<strong> Salin, F.<\/strong>, Uriac, P., Duca, M., 2018. Modulation of oncogenic miRNA biogenesis using functionalized polyamines. 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Genetic divergence within the monotypic tree genus Platycarya (Juglandaceae) and its implications for species\u2019 past dynamics in subtropical China. Tree Genetics &amp; Genomes 13, 73. <a href=\"http:\/\/dx.doi.org\/10.1007\/s11295-017-1153-9\" target=\"_blank\" rel=\"noreferrer noopener\">http:\/\/dx.doi.org\/10.1007\/s11295-017-1153-9<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>La PGTB est associ\u00e9e chaque ann\u00e9e dans de nombreuses publications, en co-autorat ou en remerciement. La PGTB doit \u00eatre a minima mentionn\u00e9e dans les remerciements des publications issues des projets r\u00e9alis\u00e9s \u00e0 la plateforme. La phrase suivante est propos\u00e9e : \u00ab\u00a0Part of the experiments (specify which ones) were performed at the PGTB (<a href=\"https:\/\/doi.org\/10.15454\/1.5572396583599417E12\" rel=\"nofollow\">https:\/\/doi.org\/10.15454\/1.5572396583599417E12<\/a>) with the<a class=\"more-link\" href=\"https:\/\/pgtb.fr\/en\/publications\/\">Continue reading <span class=\"screen-reader-text\">\u00ab\u00a0Publications\u00a0\u00bb<\/span><\/a><\/p>","protected":false},"author":216247060,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_crdt_document":"","advanced_seo_description":"","jetpack_seo_html_title":"","jetpack_seo_noindex":false,"footnotes":""},"class_list":["post-384","page","type-page","status-publish","hentry","entry"],"jetpack_likes_enabled":true,"jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/PdFmHm-6c","jetpack-related-posts":[],"_links":{"self":[{"href":"https:\/\/pgtb.fr\/en\/wp-json\/wp\/v2\/pages\/384","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pgtb.fr\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/pgtb.fr\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/pgtb.fr\/en\/wp-json\/wp\/v2\/users\/216247060"}],"replies":[{"embeddable":true,"href":"https:\/\/pgtb.fr\/en\/wp-json\/wp\/v2\/comments?post=384"}],"version-history":[{"count":33,"href":"https:\/\/pgtb.fr\/en\/wp-json\/wp\/v2\/pages\/384\/revisions"}],"predecessor-version":[{"id":3788,"href":"https:\/\/pgtb.fr\/en\/wp-json\/wp\/v2\/pages\/384\/revisions\/3788"}],"wp:attachment":[{"href":"https:\/\/pgtb.fr\/en\/wp-json\/wp\/v2\/media?parent=384"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}